Location: SLC transporters @ d36dca3e6ed8 / Facilitated transporter / CellMLV2 / GLUT1_kinetic.sedml

Author:

Weiwei Ai <wai484@aucklanduni.ac.nz>

Date:

2024-04-08 18:20:16+12:00

Desc:

clean up; correct the cell volume to 0.09 pL; remove the param convertion equations in cellml; use python to do the conversion;

Permanent Source URI:

http://models.cellml.org/workspace/b65/rawfile/d36dca3e6ed80f08a478e14a9be7695786950d7e/Facilitated transporter/CellMLV2/GLUT1_kinetic.sedml

<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version4" level="1" version="4">
  <listOfModels>
    <model id="GLUT1_kinetic" language="urn:sedml:language:cellml" source="GLUT1_kinetic.cellml"/>
  </listOfModels>
  <listOfSimulations>
    <uniformTimeCourse id="sim_GLUT1_kinetic" initialTime="0" outputStartTime="0" outputEndTime="25" numberOfSteps="25">
      <algorithm name="VODE" kisaoID="KISAO:0000535"/>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfTasks>
    <task id="task_GLUT1_kinetic" modelReference="GLUT1_kinetic" simulationReference="sim_GLUT1_kinetic"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="dg_GLUT1_kinetic_t" name="dg_GLUT1_kinetic_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_t </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_t" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_kinetic_v_io_ss" name="dg_GLUT1_kinetic_v_io_ss">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_v_io_ss </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_v_io_ss" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;v_io_ss&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_kinetic_v_oi_ss" name="dg_GLUT1_kinetic_v_oi_ss">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_v_oi_ss </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_v_oi_ss" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;v_oi_ss&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_kinetic_v_io_ss_e" name="dg_GLUT1_kinetic_v_io_ss_e">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_v_io_ss_e </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_v_io_ss_e" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;v_io_ss_e&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_kinetic_v_oi_ss_e" name="dg_GLUT1_kinetic_v_oi_ss_e">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_v_oi_ss_e </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_v_oi_ss_e" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;v_oi_ss_e&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_GLUT1_kinetic_glu" name="dg_GLUT1_kinetic_glu">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> GLUT1_kinetic_glu </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="GLUT1_kinetic_glu" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;glu&quot;]" taskReference="task_GLUT1_kinetic" modelReference="GLUT1_kinetic"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <report id="report_task_GLUT1_kinetic" name="report_task_GLUT1_kinetic">
      <listOfDataSets>
        <dataSet id="dataset_GLUT1_kinetic_t" label="t" dataReference="dg_GLUT1_kinetic_t"/>
        <dataSet id="dataset_GLUT1_kinetic_v_io_ss" label="v_io_ss" dataReference="dg_GLUT1_kinetic_v_io_ss"/>
        <dataSet id="dataset_GLUT1_kinetic_v_oi_ss" label="v_oi_ss" dataReference="dg_GLUT1_kinetic_v_oi_ss"/>
        <dataSet id="dataset_GLUT1_kinetic_v_io_ss_e" label="v_io_ss_e" dataReference="dg_GLUT1_kinetic_v_io_ss_e"/>
        <dataSet id="dataset_GLUT1_kinetic_v_oi_ss_e" label="v_oi_ss_e" dataReference="dg_GLUT1_kinetic_v_oi_ss_e"/>
        <dataSet id="dataset_GLUT1_kinetic_glu" label="glu" dataReference="dg_GLUT1_kinetic_glu"/>
      </listOfDataSets>
    </report>
  </listOfOutputs>
</sedML>